You can delete the folder locally and then push.
1st:- git rm -rf folder name
2nd:-git add *
3rd:-git commit -a -m "removed folder"
4th:-git push origin master
How to delete multiples files in Github
Make sure you are in the default branch:
Git checkout master
The rm -r command will delete your folder again:
git rm -r folder-name
make changes:
git commit -m "remove duplicate directory"
Push changes to your remote repository:
git push original master

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